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Harmful Algal Bloom Monitoring in the Southern Sacramento-San Joaquin Delta

The Department of Water Resources (DWR) North Central Region Office (NCRO) Water Quality Evaluation Section (WQES) and the Division of Operations and Maintenance (O&M) provide technical expertise and program support for regulatory compliance, water operations, emergency response, and environmental restoration. Harmful Algal Blooms (HABs) are large overgrowths of algae in eutrophic marine or freshwater ecosystems that degrade beneficial uses of water resources, from aesthetics to habitat quality to human consumption. The Sacramento-San Joaquin Delta has observed an increasing number of HABs, especially in the South Delta. These HABs have been composed primarily of cyanobacteria, or blue-green algae (BGA). The most prevalent HAB producing cyanobacteria in recent years is the freshwater species Microcystis aeruginosa - a known producer of toxins called microcystins. Microcystins negatively affect the health of aquatic and terrestrial organisms alike, including humans and their pets. In late 2017, the Central Valley Water Resources Control Board (CVWRCB) issues a Section 401 Water Quality Certification for the DWR South Delta Temporary Barriers Projects. This certification required DWR to develop a dataset of surface Microcystis Visual Index (MVI) values during standard water quality station visits. In addition to the MVI, requirements for DWR to collect water samples for phytoplankton enumeration and cyanotoxin analysis began in 2019 and 2022, respectively. Together these data help DWR and CVWRCB to understand the distribution and composition of the algal community in the South Delta and to evaluate the species that contribute to HABs. As a separate project, DWR O&M collects cyanotoxin and taste and odor samples at Clifton Court Forebay and the Harvey O. Banks Pumping Plant to ensure that the water exported from the Delta is safe for use. This dataset provides an ongoing collection of taste and odor and cyanotoxin analysis beginning in 2009 and 2012, respectively. ## About This Federated Record This CNRA Open Data Platform record is based on metadata federated from the Environmental Data Initiative (EDI) Data Portal. Its purpose is to improve the discoverability of the data package through the CNRA Open Data Platform. The EDI Data Portal is the repository of record for this data package. Metadata, resource links, and supporting information displayed here may not reflect the latest updates available in EDI. Resources shown here—including Full Metadata, Provenance, and Data Quality Report—are provided to help users understand and evaluate the data package and the supporting information available from EDI. For the current data package, citation, DOI, data files, metadata, provenance, data quality documentation, revision history, and other supporting information, refer to the EDI data package landing page: https://portal.edirepository.org/nis/metadataviewer?packageid=edi.2141.1&key=vqSpNwnbe91Bi8trB5RY25CoPD4 Access requirements, permissions, and authorization policies for resources hosted by EDI are established and managed independently of the CNRA Open Data Platform.

Data files

No files available

Supporting files

Data title and descriptionAccess dataFile detailsLast updated

South Delta Water Quality Stations

Water quality station coordinates where continuous and discrete values are collected.

CSV (EXTERNAL DOWNLOAD)
09/25/26

Microcystis Visual Index

A dataset containing Microcystis Visual Index (MVI) data collected at various locations in the Sacramento-San Joaquin South Delta (South Delta) from 2017-2024.

CSV (EXTERNAL DOWNLOAD)
09/25/26

Potentially Toxic Cyanobacteria Cell Counts

Potentially Toxic Cyanobacteria (PTOX) detected at sampling locations in the South Delta from 2022-2024.

CSV (EXTERNAL DOWNLOAD)
09/25/26

Cyanotoxins-NCRO

A data set containing cyanotoxin concentrations in whole-water grab samples collected at various locations across the South Delta from 2022-2024. This dataset was conducted by the Department of Water Resources North Central Region Office (NCRO)

CSV (EXTERNAL DOWNLOAD)
09/25/26

Phytoplankton Enumeration Data

Department of Water Resources-North Central Region Office phytoplankton data at multiple sampling locations in the Sacramento-San Joaquin South Delta from 2019-2023.

CSV (EXTERNAL DOWNLOAD)
09/25/26

Cyanotoxins-O&M

A data set containing cyanotoxin concentrations in whole-water grab samples collected at various locations across the South Delta from 2012-2024. This dataset was conducted by the Department of Water Resources Division of Operations and Maintenance (O&M).

CSV (EXTERNAL DOWNLOAD)
09/25/26

Taste and Odor

A dataset containing taste and odor samples collected near Clifton Court Forebay from 2009 to 2023 by the Department of Water Resources Division of Operations and Maintenance.

CSV (EXTERNAL DOWNLOAD)
09/25/26

Provenance Metadata

This method step describes provenance-based metadata as specified in the LTER EML Best Practices. This provenance metadata does not contain entity specific information.

HTML
09/25/26

Full Metadata

A link to the original metadata web page on the EDI Portal

HTML
09/25/26

Dataset Quality Report

A link to the EDI Quality Metadata Page

HTML
09/25/26

API endpoint

Dataset Name

Use the query web API to retrieve data with a set of basic parameters. Copy the API endpoint you need to start.

Usage documentation