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Interagency Ecological Program: Delta Smelt Diet Data collected in the San Francisco Estuary

The integrated dataset presented here includes diets of morphologically identified Delta Smelt (Hypomesus transpacificus), both of wild and culture (hatchery) origin, from the San Francisco Estuary (SFE) utilizing samples collected by nine separate field monitoring projects with their associated catch and environmental data. Data is compiled from two directed studies from the Interagency Ecological Program’s Diet and Condition Study (Diet Study) conducted by the California Department of Fish and Wildlife (CDFW). Diet Study has been conducted since 2005 and examines the stomach contents of young pelagic fishes in the SFE. In 2011, the Diet Study began working with the University of California, Davis (UC Davis) to process Delta Smelt in collaboration with the Aquatic Health Program (AHP) and the Otolith Geochemistry & Fish Ecology Laboratory (OGFL) to pair measurements of multiple health metrics for each fish. In 2017, the Study started collaborating with the Directed Outflow Project (DOP) to process Delta Smelt collected by the U.S. Fish and Wildlife Service’s (USFWS) Enhanced Delta Smelt Monitoring (EDSM) program. Fish are collected by several CDFW and USFWS fish monitoring projects, preserved, and transferred to UC Davis where the fish are measured, weighed, and dissected. The guts are then transferred to Diet Study staff where stomach contents are enumerated and identified to the lowest possible taxon. Here we present Delta Smelt diet by number data, paired with environmental variables, conversion factors to convert diet by number to diet by weight, and calculated gut fullness values from 2011 onward. Data from the study inception (i.e. 2005) to 2011 will be published in future packages. ## About This Federated Record This CNRA Open Data Platform record is based on metadata federated from the Environmental Data Initiative (EDI) Data Portal. Its purpose is to improve the discoverability of the data package through the CNRA Open Data Platform. The EDI Data Portal is the repository of record for this data package. Metadata, resource links, and supporting information displayed here may not reflect the latest updates available in EDI. Resources shown here—including Full Metadata, Provenance, and Data Quality Report—are provided to help users understand and evaluate the data package and the supporting information available from EDI. For the current data package, citation, DOI, data files, metadata, provenance, data quality documentation, revision history, and other supporting information, refer to the EDI data package landing page: https://portal.edirepository.org/nis/metadataviewer?packageid=edi.2354.1&key=vqSpNwnbe91Bi8trB5RY25CoPD4 Access requirements, permissions, and authorization policies for resources hosted by EDI are established and managed independently of the CNRA Open Data Platform.

Data files

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Supporting files

Data title and descriptionAccess dataFile detailsLast updated

Delta Smelt Diet Data 2011to2023

Delta Smelt diet by number matrix. Includes environmental data from the field project that collected the fish, plus calculated values for total prey weight and gut fullness. Calculated values (i.e. total prey weight and gut fullness) are provided so the data user can verify their calculations with this data. These values change based on prey weight conversions, could be overinflated (e.g. Gut Fullness) due to calculations assuming prey are full and intact, and are periodically updated based on new data. Refer to prey category list and definitions for full description and when conversion values were updated. For additional information on field data, please contact the associated field project.

CSV (EXTERNAL DOWNLOAD)
09/25/26

Delta Smelt Prey Lengths

Lengths of the larger prey (e.g. mysids, fish) found in stomachs. Includes prey weights, eye diameter, antennae lengths, and prey sex if applicable.

CSV (EXTERNAL DOWNLOAD)
09/25/26

Prey Definitions and Conversions

Prey category definitions, taxonomic classifications, start/end date when that category was used, weight conversions and weight reference. Weight conversions can be used to calculate diet by weight. For prey that did not have measured wet weight values from CDFW Diet Study fish, wet weight was calculated from published carbon weight values as Wet weight = ((carbon weight/ 0.42)/ 0.13)). Where carbon weight is 42% of dry weight and dry weight is 13% wet weight, which was adapted from Beers 1996. Beers, J.R. 1966. Studies on the chemical composition of the major zooplankton groups in the Sargasso Sea off Bermuda. Limnology and Oceanography 11:520-528. Values are updated as new data becomes available.

CSV (EXTERNAL DOWNLOAD)
09/25/26

Prey Size Equations

Values needed to calculate size relationships for large prey types (e.g. mysids and amphipods). Equations are used to either calculate length from antennae length or eye diameter, or weights from lengths.

CSV (EXTERNAL DOWNLOAD)
09/25/26

Delta Smelt Diet Station Lookup

Station location lookup table for field monitoring project stations in the diet matrices. Note some stations with the same number designation can have slightly different locations between projects.

CSV (EXTERNAL DOWNLOAD)
09/25/26

Provenance Metadata

This method step describes provenance-based metadata as specified in the LTER EML Best Practices. This provenance metadata does not contain entity specific information.

HTML
09/25/26

Full Metadata

A link to the original metadata web page on the EDI Portal

HTML
09/25/26

Dataset Quality Report

A link to the EDI Quality Metadata Page

HTML
09/25/26

API endpoint

Dataset Name

Use the query web API to retrieve data with a set of basic parameters. Copy the API endpoint you need to start.

Usage documentation